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<li><a class="" href="index.html">简介</a></li>
<li class="book-part">Part I: R</li>
<li><a class="" href="r-base.html"><span class="header-section-number">1</span> 语言基础</a></li>
<li><a class="" href="r-stat.html"><span class="header-section-number">2</span> 统计分析</a></li>
<li><a class="" href="r-vis.html"><span class="header-section-number">3</span> 数据可视化</a></li>
<li><a class="" href="r-deve.html"><span class="header-section-number">4</span> R语言开发</a></li>
<li class="book-part">Part Ⅱ: Python</li>
<li><a class="" href="python-base.html"><span class="header-section-number">5</span> Python基础</a></li>
<li><a class="" href="python-stat.html"><span class="header-section-number">6</span> 数据统计分析</a></li>
<li><a class="" href="python-spider.html"><span class="header-section-number">7</span> Python爬虫</a></li>
<li><a class="" href="ai.html"><span class="header-section-number">8</span> 人工智能</a></li>
<li class="book-part">Part Ⅲ: 生物信息学</li>
<li><a class="active" href="bio-base.html"><span class="header-section-number">9</span> 基础知识</a></li>
<li><a class="" href="bio-env.html"><span class="header-section-number">10</span> 环境搭建</a></li>
<li><a class="" href="genomics.html"><span class="header-section-number">11</span> 基因组学</a></li>
<li><a class="" href="rnaseq.html"><span class="header-section-number">12</span> RNA-Seq</a></li>
<li><a class="" href="meta.html"><span class="header-section-number">13</span> 代谢组学</a></li>
<li><a class="" href="pro.html"><span class="header-section-number">14</span> 蛋白质组</a></li>
<li><a class="" href="multi.html"><span class="header-section-number">15</span> 多组学</a></li>
<li class="book-part">Part Ⅳ: 文献阅读</li>
<li><a class="" href="patho.html"><span class="header-section-number">16</span> 植物病理学</a></li>
<li><a class="" href="liter-genomics.html"><span class="header-section-number">17</span> 基因组学</a></li>
<li><a class="" href="liter-rnaseq.html"><span class="header-section-number">18</span> RNA-Seq</a></li>
<li><a class="" href="liter-meta.html"><span class="header-section-number">19</span> 代谢组学</a></li>
<li><a class="" href="liter-pro.html"><span class="header-section-number">20</span> 蛋白质组</a></li>
<li class="book-part">Part Ⅴ: 文章发表</li>
<li><a class="" href="myarticle.html"><span class="header-section-number">21</span> 文章发表</a></li>
<li class="book-part">Part Ⅵ: 上课笔记</li>
<li><a class="" href="class.html"><span class="header-section-number">22</span> 上课笔记</a></li>
<li class="book-part">Part Ⅶ: 其他</li>
<li><a class="" href="other.html"><span class="header-section-number">23</span> 其他笔记</a></li>
<li><a class="" href="references.html">References</a></li>
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<h1>
<span class="header-section-number">第 9 章</span> 基础知识<a class="anchor" aria-label="anchor" href="#bio-base"><i class="fas fa-link"></i></a>
</h1>
<div id="学习资源推荐" class="section level2" number="9.1">
<h2>
<span class="header-section-number">9.1</span> 学习资源推荐<a class="anchor" aria-label="anchor" href="#%E5%AD%A6%E4%B9%A0%E8%B5%84%E6%BA%90%E6%8E%A8%E8%8D%90"><i class="fas fa-link"></i></a>
</h2>
<ul>
<li><a href="https://github.com/ossu/bioinformatics">自学生信RoadMap</a></li>
<li><a href="https://www.expasy.org/">生物信息学瑞士军刀</a></li>
<li><a href="https://www.graphpad-prism.cn/?c=i&amp;a=resource">GrapgPad Prism官方教程</a></li>
</ul>
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<div id="常用的生物学数据库" class="section level2" number="9.2">
<h2>
<span class="header-section-number">9.2</span> 常用的生物学数据库<a class="anchor" aria-label="anchor" href="#%E5%B8%B8%E7%94%A8%E7%9A%84%E7%94%9F%E7%89%A9%E5%AD%A6%E6%95%B0%E6%8D%AE%E5%BA%93"><i class="fas fa-link"></i></a>
</h2>
<div id="cath-gene3d" class="section level3" number="9.2.1">
<h3>
<span class="header-section-number">9.2.1</span> CATH-Gene3D<a class="anchor" aria-label="anchor" href="#cath-gene3d"><i class="fas fa-link"></i></a>
</h3>
<p>这个数据库是蛋白质数据库，主要是蛋白结构域的进化关系。</p>
<p><a href="https://www.cathdb.info/">点击访问</a>。</p>
</div>
</div>
<div id="fasttree构建进化树" class="section level2" number="9.3">
<h2>
<span class="header-section-number">9.3</span> FastTree构建进化树<a class="anchor" aria-label="anchor" href="#fasttree%E6%9E%84%E5%BB%BA%E8%BF%9B%E5%8C%96%E6%A0%91"><i class="fas fa-link"></i></a>
</h2>
<p><a href="http://www.microbesonline.org/fasttree/">FastTree</a>是基于最大似然法构建进化树的软件，使用简单。Windows端直接下载，完后运行即可：</p>
<pre class="shell"><code>.\FastTree.exe .\YourAlignResults.fasta</code></pre>
<p>前面是软件名称，后面是比对好的序列文件。</p>

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  <div class="chapter-nav">
<div class="prev"><a href="ai.html"><span class="header-section-number">8</span> 人工智能</a></div>
<div class="next"><a href="bio-env.html"><span class="header-section-number">10</span> 环境搭建</a></div>
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<li><a class="nav-link" href="#bio-base"><span class="header-section-number">9</span> 基础知识</a></li>
<li><a class="nav-link" href="#%E5%AD%A6%E4%B9%A0%E8%B5%84%E6%BA%90%E6%8E%A8%E8%8D%90"><span class="header-section-number">9.1</span> 学习资源推荐</a></li>
<li>
<a class="nav-link" href="#%E5%B8%B8%E7%94%A8%E7%9A%84%E7%94%9F%E7%89%A9%E5%AD%A6%E6%95%B0%E6%8D%AE%E5%BA%93"><span class="header-section-number">9.2</span> 常用的生物学数据库</a><ul class="nav navbar-nav"><li><a class="nav-link" href="#cath-gene3d"><span class="header-section-number">9.2.1</span> CATH-Gene3D</a></li></ul>
</li>
<li><a class="nav-link" href="#fasttree%E6%9E%84%E5%BB%BA%E8%BF%9B%E5%8C%96%E6%A0%91"><span class="header-section-number">9.3</span> FastTree构建进化树</a></li>
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